rs31243464 SNP Detail

Summary

• ID
  rs31243464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135396001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGTCCTC TAGAAAGCCA
  CCCAACTCTA TCACCATCTC CATCTTTAGT ACTAACCACC AGTCTGAGCC CCAGTATTTG
  ATGCCATAGC CATCAAATGT TAATAAACAC CACAAGTTGT TCTCAGCCCT AAAACAACAA
  AAATTTTAGT TAAATATGCT TACTTAGAAA GCTGCAGTGT TGGCCTTTAC TTTTAAAAGT
  Y
  CATTAAAAAA ACAAAACAGA TTAAATCTAG ATGATGAAAT CTTTTTATCA TTTGTCCCAC
  TTAAGTTTTA GACTCGACCC ATAAACAGAG CCAAGATTGG TGTCTGTCTC AGAAGACCGA
  AGGAAGCCTA CATGTAGCAG AGGCGTCATG TTTGTATCGT TTTCTGTTTT GGAGGTCAGG
  CACAAAACAT GGTGCCATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45513933	mCV25339220	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31243464					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135396001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	414 bp proximal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	within coordinates
Rr585766	regulatory region 585766	1414 bp distal
Rr585767	regulatory region 585767	1296 bp proximal
Tssr31841	transcription start site region 31841	1109 bp downstream
Tssr31842	transcription start site region 31842	1090 bp downstream
Tssr31843	transcription start site region 31843	1072 bp downstream
Tssr31844	transcription start site region 31844	1037 bp downstream
Tssr31845	transcription start site region 31845	997 bp downstream
Tssr35823	transcription start site region 35823	972 bp upstream
Tssr35824	transcription start site region 35824	458 bp upstream
Tssr35825	transcription start site region 35825	899 bp downstream
Tssr35826	transcription start site region 35826	1025 bp downstream
Tssr35827	transcription start site region 35827	1034 bp downstream
Tssr35828	transcription start site region 35828	1085 bp downstream
Tssr35829	transcription start site region 35829	1145 bp downstream
Tssr35830	transcription start site region 35830	1171 bp downstream
Tssr35831	transcription start site region 35831	1180 bp downstream
Tssr35832	transcription start site region 35832	1248 bp downstream
Tssr35833	transcription start site region 35833	1272 bp downstream
Tssr35834	transcription start site region 35834	1699 bp downstream