rs31244015 SNP Detail

Summary

• ID
  rs31244015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19319712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC TGTTCTTGCG ACTGAGCGAA
  Y
  GAGCTGTCCA GAAACAAAGC CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45514499	mCV24211563	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss134666391	ENSMUSSNP6315604	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320678291	CHEV_3_19165548	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31244015					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19319712 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573966	regulatory region 573966			1747 bp distal
Rr573967	regulatory region 573967			427 bp distal
Tssr32690	transcription start site region 32690			609 bp upstream
Tssr32691	transcription start site region 32691			574 bp upstream
Tssr32692	transcription start site region 32692			543 bp upstream
Tssr32693	transcription start site region 32693			525 bp upstream
Tssr32694	transcription start site region 32694			439 bp upstream