rs31245374 SNP Detail

Summary

• ID
  rs31245374
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147402283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGGCAAA GGACACTGTC
  AATGGGACAA ATTAGTAACC TAGACATTGG GAGAAGGTCT GTATTAACCC TATATCGGAT
  AGAGGGCTAA TATCCAAAAT AAGCAGATAT CTTTGTCAGA AGCATACACT AGCACAAAAC
  AATTCTTGAA ACAAAAAGTC AATAAAATAC TATGAGTACA TACATATCTA TTTTCCTGGG
  K
  AACACTGAAT GACAGACAGA TCACCTACAT ACAAACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACATCATC TAACTTTGAA AGGTAGACTT TTATGAAATC
  ACCTGGGTAT CTGTTTAAAT TACATTCAAT GGTGATTGTG AGATCAGCAT CATCTGCATA
  GAGTTTCAAG GCTGTCCTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47032225	NES10846521	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31245374					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47032225	NES10846521	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147402283 () rs orientation: forward

Symbol	Name	Function Class
D3Mit1002	DNA Segment, Chr 3, Massachusetts Institute of Technology 1002	6 bp proximal
D3Mit1003	DNA segment, Chr 3, Massachusetts Institute of Technology 1003	102 bp proximal