rs31245379 SNP Detail

Summary

• ID
  rs31245379
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147402544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACATCATC TAACTTTGAA AGGTAGACTT TTATGAAATC ACCTGGGTAT CTGTTTAAAT
  TACATTCAAT GGTGATTGTG AGATCAGCAT CATCTGCATA GAGTTTCAAG GCTGTCCTTG
  TCCTTGAACA GCCCTGTGAG GACAACAGCC CTGTGAGGAC GTGTGTCTGG GGTGTACGAT
  K
  TTGAAGCTCA TGTGTTTGTG GTGATGTCAT TGCCAACTCC CCCTCACACC TTGTCTGGCC
  TTCAAAAAGG CAACACACAT CTGTTAAATG ACTGCCTTTG GTCTTTCCCA TAAAAGCCTA
  ATTACTTTTT CTTAGGTGAT AATTTTTTAG GCTATTTCTA AGTGCTTTAG TGTAAACAAA
  GCGATAAAAT GAACACAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47032231	NES10846524	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31245379					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47032231	NES10846524	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147402544 () rs orientation: forward

Symbol	Name	Function Class
D3Mit1002	DNA Segment, Chr 3, Massachusetts Institute of Technology 1002	135 bp distal
D3Mit1003	DNA segment, Chr 3, Massachusetts Institute of Technology 1003	within coordinates