rs31246053 SNP Detail

Summary

• ID
  rs31246053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102121176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGTTTTA ACCACAATTC
  CTGGTTTCCA TTACAGCTTC TGTGCTTATC AAGTAAGCTT TAGTTTGGTG CTCTCGTGTA
  TGCATAAGAT ATAATTCATT AGGACTTCAG ATGTCATCTA GCCTGGCTTC TCTGATGTAG
  GATCCATGTC CCTAAGAGTG GCCTTACAGG GGTCTGTCTA TCACCATTGA ATCTTGCTCC
  R
  TCTTCCTTTG GTTTCTATGC TTGACTGTTA CTTCCTGGAA ATCTGATGGC TTCCTGCCTT
  TTGTTATATT ACTGAGTTCC TGTAGACTTG CGCTGTCTCA TTGGATTTTA TCAGGTGATA
  TACCTCAGCA GATTTATGAA GCACTGTGGT GTCAAAGAAG GTTGGAAAGA GAAGGGACTG
  TCCAGGGCTT GGGGGATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39269317	mCV22290651	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss49352299	NES12571298	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	G	G	G	G	G
ss146740340	ENSMUSSNP1145194	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31246053					SNP	G	G	A	A	A	A	A	A	G	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352299	NES12571298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102121176 () rs orientation: forward

Symbol	Name	Function Class
Lmo7	LIM domain only 7	within coordinates
Rr296718	regulatory region 296718	within coordinates
Tssr126927	transcription start site region 126927	298 bp upstream
Tssr126928	transcription start site region 126928	306 bp upstream
Tssr126929	transcription start site region 126929	387 bp upstream
Tssr126930	transcription start site region 126930	574 bp upstream