rs31246172 SNP Detail

Summary

• ID
  rs31246172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:22532441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCATGGAA CAAAAATAAA GGATGCCTAA AAAAGGATAA
  ACATGAAGGA GAGAGAAAAT ATCAGAAATA AAAATGTCTC TTTTCCTCTA AGCATGTAGG
  S
  TCAGACACAT GCACAGTCAT TCTCCCTTGA ACTCTGAGGA AGAGCTAGGG AGACTCCAGG
  AAAACTATTG TCACTAACAG AAACCAGACT GCTGCACTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
ss46012336	mCV23506691	ABI	CRAMUS_MOUSE	f	SNP	C				G	C
ss48354584	NES12250125	PERLEGEN	MM_PANEL2	f	SNP		G	G	G		C	G	G	C		G	G
ss145303988	ENSMUSSNP1264800	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
rs31246172					SNP	C	G	G	G	G	C	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354584	NES12250125	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22532441 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	Intron
Gm53992	predicted gene, 53992	1462 bp upstream
Rr392409	regulatory region 392409	647 bp downstream
Rr523017	regulatory region 523017	800 bp proximal
Rr523018	regulatory region 523018	1367 bp proximal
Tssr146602	transcription start site region 146602	1334 bp downstream
Tssr146603	transcription start site region 146603	1354 bp downstream