rs31246266 SNP Detail

Summary

• ID
  rs31246266
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26383919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG ATGGCACTGT GTCTTTCAGG
  S
  GAGTCATCTG ACTGACCCTG CCCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45513862	mCV22681609	ABI	CRAMUS_MOUSE	f	SNP	C	G					G		C
ss51444684	NES14435718	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	C	G		G	C	C	G		G	C	C	G		G
ss134693980	ENSMUSSNP620486	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G							C
ss320687271	CHEV_3_26228692	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31246266					SNP	C	G	G	G	C	G	G	G	C	C	G	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444684	NES14435718	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26383919 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	1380 bp upstream
Cpgi13015	CpG island 13015	1524 bp proximal
Nlgn1	neuroligin 1	Intron
Rr574316	regulatory region 574316	958 bp proximal
Rr574317	regulatory region 574317	1459 bp proximal
Tssr32829	transcription start site region 32829	1267 bp downstream
Tssr32830	transcription start site region 32830	1730 bp downstream