rs31247036 SNP Detail

Summary

• ID
  rs31247036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152586731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACCGTC CTCTGCAAGG
  GCTTACTGTC ACGGGGTCTA CTGTAAAAAG GACACAGTTT AATTGTCATG AGGTTGTATT
  TTAAATGCTG TTCACAGAGA ACTCGATGCT AGAGACAACC TAAGACTGTT AACTCCAAAC
  ATAACTAGCA TTAGAGATAA TTTTATTTCT TTAGTGTAAA ATAACAATAC AACGTAGAAC
  R
  TTGGCATAAT GCCTACTGCA GAATTCAAAG GGTTGCCACC CTTTGAATTT AGCTGGCTGG
  GTCCTGCTTA GGAGCATCAT AGTGGGTCAG CACCATAGAA GGCTTCCGTG CACATCGGGG
  GAGGGGGTCT TCCACAGGCA CTTTGCATGC AAGGTTAGGT GTTTGGGACC AAAGCTAGAC
  AGACTCAACG GCTCCCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45514923	mCV25265478	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss136104282	ENSMUSSNP827789	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss321029027	CHEV_3_152544058	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31247036					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152586731 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	1131 bp distal
Rr79922	regulatory region 79922	131 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates