rs31247792 SNP Detail

Summary

• ID
  rs31247792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157266161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGACACCTC AAGGTTCCTG AAGGCATCAT
  GACTGAGTCT GAGGTAATGT CTCCTTGACA TAAAGATGGC TATTAAAATC ATGTAAACAT
  TAAAGTAACC GTGCCAGCTT GTTTTCCAGT ATTTTAAAGA CCATTGGGCT TACACCAAAT
  Y
  CCAGTGTCAC AAGTACCTGT CACCTCCCCA CCCCTATCCC CTTGCCCAGC CAAGGGTGGG
  GTTCCAAAGG CGATTTCTAT TTCCAGAGTC ATGGAAACCA GACCTTGGTT TGAGCTTCGA
  CAGATTGTGT AATTTAAAAG TTAAATTTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45072903	mCV22694252	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss49718219	NES13055689	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C		C	C	C		T
ss320074081	CHEV_1_159368722	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31247792					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49718219	NES13055689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157266161 () rs orientation: forward

Symbol	Name	Function Class
Gm71050	predicted gene, 71050	within coordinates
Rr421381	regulatory region 421381	1179 bp proximal
Rr421382	regulatory region 421382	1960 bp proximal