rs31248230 SNP Detail

Summary

• ID
  rs31248230
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146165017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGATCA GGCTGGCCTC
  AAACTCAGAA ATCCGCCTGC CTCTGCCTCC CAAGTGCTAG AATTAAAGGT GTTGACCACG
  CCGGTTCTTT TTAACTCTTT ACTATCATGG CAGTTTCTGA ATGCCATGAA TTTTATTTTA
  TTATTAATTT CATGATTATT CTGTATAATC AGGTTATTTA TAGCATATCT TTTAAAAAAA
  W
  ATATTTATTT TATGTATATT AGTCCACTGT AGCTGTCTTC TGACACACCA GAAGAGGGCA
  TCAGATCCCA TTACAGATGG TTGTGAGCCA CCATGTGGTT GCTGGGAGTG AAATCAGGAC
  CTCTGGAAGA GCAGTCAGTG CTCTAAACTG TTGAGCCATC TCTCCAGCCC CATAGCATAT
  CTTTTATTTC TCCTCTAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45515441	mCV24074680	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss136044660	ENSMUSSNP6093712	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T		A
ss321010478	CHEV_3_146122226	CHEVERUD	SCREENING_POP	f	SNP				A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31248230					SNP	A	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146165017 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	44 bp proximal
Spata1	spermatogenesis associated 1	Intron