rs31249266 SNP Detail

Summary

• ID
  rs31249266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCTGT AACCCAGGAG
  GTCGTGAAGC CCTTTGAGGG CTTGGAGTGG GCAGAGAGCC TTGGGTTACC GTGTGTGCAC
  CTCCCTCGGG TGCTCTGGAA GGTGACATGT GGAGGCCCAG ACAGGACTTT GGAGTTCTGG
  TCAGCCTGTC TGTCTGGGTC TGTGTCAGTG AACCTGTCTT TCTAGAAACA GACACGCATG
  R
  TGGCGCTTGG AGAATTGCTG GGCTCCTTCC TGGAGTTTGG TCCAGAAGCC TCCTTGCAGG
  TTGCTCTTTT GGAATCAAAA GGCCCGAGAG TTAGGGAGAG CAAGAACTCA GGACCCAGAA
  ACAGACAGTC AGTCTTACGC AGAACAGTTG GGGCATGCAA GGCCCAACTG GACTTTTGAG
  GACAGGACGG GCTCATACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss46013087	mCV22696588	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss61003431	NES16114216	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A
ss149135484	ENSMUSSNP4738690	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs31249266					SNP	A	G	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003431	NES16114216	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110042 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	1079 bp downstream
Cpgi19060	CpG island 19060	1188 bp distal
Cpgi19061	CpG island 19061	484 bp distal
Ftl1	ferritin light polypeptide 1	734 bp upstream
Gm10252	predicted gene 10252	318 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	391 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	244 bp distal
Rr646451	regulatory region 646451	509 bp distal
Rr646452	regulatory region 646452	within coordinates
Rr646453	regulatory region 646453	402 bp proximal
Rr646454	regulatory region 646454	835 bp proximal
Tssr66541	transcription start site region 66541	930 bp downstream
Tssr66542	transcription start site region 66542	446 bp upstream
Tssr72395	transcription start site region 72395	1193 bp upstream
Tssr72396	transcription start site region 72396	1161 bp upstream
Tssr72397	transcription start site region 72397	887 bp upstream
Tssr72398	transcription start site region 72398	737 bp upstream
Tssr72399	transcription start site region 72399	304 bp downstream
Tssr72400	transcription start site region 72400	342 bp downstream