rs31249600 SNP Detail

Summary

• ID
  rs31249600
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176540937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGG TTTATAGTCA TAGTAATTAA
  W
  GAAAATAACT AAAAATTTCA AACTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss45012306	mCV25116239	ABI	CRAMUS_MOUSE	f	SNP	T	T	A				T	T
ss46702082	NES10690846	PERLEGEN	MM_PANEL2	f	SNP				A	T	T		T	A	T	T	A
ss146339986	ENSMUSSNP1010567	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs31249600					SNP	T	T	A	A	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702082	NES10690846	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176540937 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	505 bp downstream
Rr423899	regulatory region 423899	488 bp distal
Rr423900	regulatory region 423900	774 bp distal