rs31249804 SNP Detail

Summary

• ID
  rs31249804
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89067684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCCTCCCCA ACCGGTCCAG GGCCATGGCG GGCGCGCAAG TCTCTGGGAG AGCAGCCCAG
  GCAGGGGAGC TCCGACCCGC GTGCGCCCGG GGCACAGGGG GCGTGTGCAG GCGACAGACG
  TGCGAGAGCT GCGCCCCCTG GCGAGGGCTG CGTGAGACTG GGCGGGGCGG GGCGGGGCGG
  GCCGCTGGCA CAACTGCTGC CCACACTTTC CCGAGAGGGC GTGGCTTAGG GGTCCTGAGG
  GTGGGGTGGG TGCTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  S
  TGTCTGTCTG TCTGTCTGTC TGTGTCTGTG TGTGTGTCTG TGTGTCTGTG TGGTGGGAGT
  GCTCAGCTTG CTTCTGGAGG CGGGAAACTC ACTAGGGCAT ATGCAGCCTG GGGACCTCCT
  GAGGGTCAGG GACAGAATGG GAATCTGTTC TGACCATGTC CTTTCTCAGC ACTCTCCTAG
  GAGTCTTGCT ATGCCAGAGA TCCTCTAAAC TGCTTTCTGT AGTATGTGTT TCCTAATTCA
  TTAAGACAAC CTTTAGCAAA ACCATTCACT GAGTGCATGC TGAGGATGCA AAACTGAGCA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45514570	mCV24134784	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss135473792	ENSMUSSNP4141284	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31249804					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89067684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13404	CpG island 13404	within coordinates
Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	146 bp upstream
Rr579960	regulatory region 579960	within coordinates
Rr579961	regulatory region 579961	151 bp distal
Tssr34093	transcription start site region 34093	175 bp upstream