rs31249864 SNP Detail

Summary

• ID
  rs31249864
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:63402818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTAGACAGC CTGACCCAGA ACACCCAAAT TATACCCACA
  GGAATTATTT CTGACAAGTT ATTATCCTCT ATAACAATCT TTTCCAAAAC ACCTTGATTT
  S
  AAGATCCACA GGGAAGCTTA TTTACAACGT AGCCCTCCAT CCTGATTCAG GACCCTTGCG
  TTGGCCCTCT GTATGAAGTA CAGATCCCTA GGGGACACA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46012270	mCV25346988	ABI	CRAMUS_MOUSE	f	SNP		C						G	C
ss48253571	NES11760229	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		C	G	C	G	G	G	G
ss144828352	ENSMUSSNP3123255	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31249864					SNP	G	C	G	G	G	G	G	G	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48253571	NES11760229	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63402818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19187	CpG island 19187	1680 bp proximal
Otud7a	OTU domain containing 7A	within coordinates