rs31250138 SNP Detail

Summary

• ID
  rs31250138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156909502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTAAACAG GGGACTCCAC GTTCTTGTTT GACCCAGACA
  CCAATGCACC TGCAGCTGGT TCTCAGGCCT TCCATTGGTG GCCTAGAGCT ATGCTCATTT
  Y
  TGAAACCCAA CCTTCCTTGG ATTTTTTCCC CTTTAACTCT TCTTAGATTT TAGTAACATA
  AAAGTTTTAA TTCTCTGAAG CGCCTATGAA AGCAAGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45112449	mCV24701524	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss49719414	NES13062185	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	C	C		C	T	C	T	T	C	C	T
ss145814264	ENSMUSSNP6249234	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31250138					SNP	C	C	C	C	T	C	C	C	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719414	NES13062185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156909502 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	273 bp upstream
Gm30568	predicted gene, 30568	301 bp upstream
Rr421335	regulatory region 421335	1797 bp distal
Rr421337	regulatory region 421337	330 bp distal
Rr421338	regulatory region 421338	430 bp distal
Rr421339	regulatory region 421339	within coordinates
Rr421340	regulatory region 421340	269 bp distal
Rr421341	regulatory region 421341	165 bp proximal
Rr421342	regulatory region 421342	251 bp proximal
Rr421343	regulatory region 421343	472 bp proximal
Rr421344	regulatory region 421344	922 bp proximal