rs31250142 SNP Detail

Summary

• ID
  rs31250142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156908332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC ACGCCTTGTG GGAAGCTCTT
  Y
  AAAAAGGCAG ATCCAAGGGG ACCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49719418	NES13062177	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	C	C
ss145814206	ENSMUSSNP3489783	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31250142					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719418	NES13062177	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156908332 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421335	regulatory region 421335	627 bp distal
Rr421336	regulatory region 421336	1209 bp distal
Rr421337	regulatory region 421337	630 bp proximal
Rr421338	regulatory region 421338	719 bp proximal
Rr421339	regulatory region 421339	841 bp proximal
Rr421340	regulatory region 421340	880 bp proximal
Rr421341	regulatory region 421341	1335 bp proximal
Rr421342	regulatory region 421342	1421 bp proximal
Rr421343	regulatory region 421343	1642 bp proximal