rs31251024 SNP Detail

Summary

• ID
  rs31251024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156907254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG CTTTCTTTGG CCCTGAATGC
  R
  GCTTTGCAAG TCTAGATTCA TGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
ss45165181	mCV24701501	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A	G
ss49719420	NES13062226	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A		G		A	A
ss145814199	ENSMUSSNP4635622	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
rs31251024					SNP	A	A	A	A	G	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719420	NES13062226	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156907254 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421332	regulatory region 421332	1978 bp distal
Rr421335	regulatory region 421335	within coordinates
Rr421336	regulatory region 421336	131 bp distal
Rr421337	regulatory region 421337	1708 bp proximal
Rr421338	regulatory region 421338	1797 bp proximal
Rr421339	regulatory region 421339	1919 bp proximal
Rr421340	regulatory region 421340	1958 bp proximal