rs31252534 SNP Detail

Summary

• ID
  rs31252534
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70347742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTTACT TATTTGTGAA
  ACAGTAGGAA TATTTAACAC CAATATATGA TTTTTCTCAA AGATATTTTT TAAGTCATGC
  CTGGTGGTGC ATGCCTGTAA TTTCAGCACT TACAAGGCTG AGGCAAGAGG ATTGCTGTGA
  ATTTAATGTC AGCTTGTATT ATAGAATGAG TTACAGGCTA ATGAAAGCCA CAGAGTAAGA
  M
  CCTATCTTTA AACAACAACA ACAAAACAAC AAAAACCCAC ATAAACATAC ACCAAAAAAA
  AAAAAAAGAT TGTATAGTTC ATGTTCACGT GTGTGTTTTT TGACAGTGCT AGGACAACCT
  CAGCTGCTGT CCCCAGGAGC TATGTACCTT GTGTGCCTTG CTTTTAAGGT AGGATCTCAC
  CAGCCTGGGA CTCCAAGTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39270522	mCV24339238	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss139680836	ENSMUSSNP5650521	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31252534					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70347742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494843	regulatory region 494843			590 bp distal
Rr494844	regulatory region 494844			678 bp proximal
Rr494845	regulatory region 494845			772 bp proximal