rs31252808 SNP Detail

Summary

• ID
  rs31252808
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30736249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCACAG GCACCTCCCA
  CCCACACTAT GGCAACAAGC ACCTGCCTGC ACCCCCCGCC CCCCAAGGCT GGACCAGCTG
  CTCAGCCCAG GCGGGTCCCT CTTTTGGACC TCCGCTAACA ACCCGAGAGC AGGGGACAGG
  ATTACACCGA CTTTGTCCCT CCAGCCTAGA GATACTTATT TAAAATATCC TGAACATCCT
  M
  TCTACTTTTG GACCAAAAAA TAGCGGGGCA TTCTCTTCTT AATTCTAATT TAATTTAAAA
  TGTTGGACAC AGGGTCTGCC ATGTACCCCA CGCCGGCCTC ATGTTCTCAC TCCTGAGCTC
  TGACGTCACA CAAAGGTTAA GGGGTCATCT GCTGCCTTAG TCTCAGCTCA GCCTCTTTCC
  ACACACCTGC TGCCACCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46013399	mCV22838200	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss148696886	ENSMUSSNP4385498	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss322138598	CHEV_7_31821843	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31252808					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30736249 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	19 bp upstream
Gm71772	predicted gene, 71772	165 bp upstream
Rr644979	regulatory region 644979	1745 bp distal
Rr644980	regulatory region 644980	1800 bp distal
Rr644981	regulatory region 644981	75 bp proximal
Rr644982	regulatory region 644982	176 bp proximal
Tssr2191	transcription start site region 2191	1339 bp upstream
Tssr65830	transcription start site region 65830	1556 bp downstream
Tssr65831	transcription start site region 65831	164 bp upstream
Tssr65832	transcription start site region 65832	584 bp upstream
Tssr65833	transcription start site region 65833	981 bp upstream
Tssr65834	transcription start site region 65834	1035 bp upstream
Tssr71891	transcription start site region 71891	325 bp upstream
Tssr71892	transcription start site region 71892	194 bp downstream
Tssr71893	transcription start site region 71893	1036 bp downstream
Tssr71894	transcription start site region 71894	1057 bp downstream
Tssr71895	transcription start site region 71895	1070 bp downstream
Tssr71896	transcription start site region 71896	1100 bp downstream