rs31253394 SNP Detail

Summary

• ID
  rs31253394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101312497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTT AACAGGTCTT CATCGAAAAT
  R
  CAATTTTATT TAAACACTAG GGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46013140	mCV24196632	ABI	CRAMUS_MOUSE	f	SNP		G					G	A
ss47092536	NES11615989	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A		A	G	G	A	G	G	A	G
ss145557405	ENSMUSSNP6122647	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31253394					SNP	G	G	G	G	G	A	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092536	NES11615989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101312497 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	461 bp upstream
Cpgi19507	CpG island 19507	270 bp proximal
Rr400489	regulatory region 400489	207 bp upstream
Rr652442	regulatory region 652442	1069 bp distal
Rr652443	regulatory region 652443	within coordinates
Rr652444	regulatory region 652444	668 bp proximal
Rr652445	regulatory region 652445	722 bp proximal
Tssr68257	transcription start site region 68257	313 bp upstream
Tssr68258	transcription start site region 68258	324 bp upstream
Tssr68259	transcription start site region 68259	345 bp upstream
Tssr68260	transcription start site region 68260	437 bp upstream
Tssr68261	transcription start site region 68261	451 bp upstream