rs31253601 SNP Detail

Summary

• ID
  rs31253601
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30092506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG GAAGTAGTCA TAGAGAAGTT
  K
  GAAACATTTA TTGAGAAACA ACAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46013413	mCV22285055	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	G
ss148676505	ENSMUSSNP5882981	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
ss322133907	CHEV_7_31178100	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31253601					SNP	T	T	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30092506 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	within coordinates
Tssr2182	transcription start site region 2182	1289 bp downstream
Tssr2183	transcription start site region 2183	1745 bp upstream
Tssr71732	transcription start site region 71732	1227 bp downstream
Tssr71733	transcription start site region 71733	1349 bp downstream
Tssr71734	transcription start site region 71734	1441 bp downstream
Tssr71735	transcription start site region 71735	1483 bp downstream