rs31254259 SNP Detail

Summary

• ID
  rs31254259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147500392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCAAATA ACTGTCCTTG
  TAGAATTCTA GGAAAGACTC ATTCACTCAG TGAAATATAG AGATTTTCAA TAAAACACTA
  TCTAAAGTTC CTTGTCCCTC AGAGACCCTC ATAGAGGGAG CACTCATGCA GAAATGTGTG
  AGACAAAGGA TAACATAGCA GGGACCTAGC AGGAACAACA CAAAATAAGG TGCTCAGATT
  W
  GTAAACTTAA TTGAGCCACA GAAGGAAATA ATCAAAATCA TTTGTCAAAG GCAAAAATGA
  AGGTAGACCG TTAACCTGAC ATAAAAGGGA GCTTTGTAGA GATGACTTAC TTAGTTATCA
  CGAAACCAAC TTAAGATAGT AAAGGCTAAA GGTCCTTGTT CCTTTTGTGG AATCCTTACC
  TGAGTTCTAT ATTAACATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47033249	NES10842393	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31254259					SNP	A	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47033249	NES10842393	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147500392 () rs orientation: forward

Symbol	Name	Function Class
Rr587161	regulatory region 587161	1850 bp proximal