rs31255741 SNP Detail

Summary

• ID
  rs31255741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10182934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GTTTGTTTTA TTTCCCAGTG
  Y
  TGGGGATCAC ACTTAAGACT TCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45012853	mCV23259631	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146041357	ENSMUSSNP1173342	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss325720136	CHEV_19_10280060	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31255741					SNP	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10182934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10601	CpG island 10601	1097 bp distal
Fen1	flap structure specific endonuclease 1	1401 bp upstream
Rr356596	regulatory region 356596	867 bp proximal
Rr361277	regulatory region 361277	1911 bp proximal
Rr362959	regulatory region 362959	133 bp distal
Rr405855	regulatory region 405855	1215 bp downstream
Tmem258	transmembrane protein 258	within coordinates
Tssr155037	transcription start site region 155037	1379 bp downstream
Tssr155038	transcription start site region 155038	1333 bp downstream
Tssr155039	transcription start site region 155039	1321 bp downstream
Tssr155040	transcription start site region 155040	890 bp upstream
Tssr158165	transcription start site region 158165	1700 bp upstream
Tssr158166	transcription start site region 158166	1622 bp upstream
Tssr158167	transcription start site region 158167	1157 bp upstream