rs31256977 SNP Detail

Summary

• ID
  rs31256977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16047405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATTAAAAT AGGGGTACTT AGGTCGGATA AGTTGAGGGA
  CTTCCACATT CATATGAGCT TTAATGGGTA ATTGACCATC CAGGTGACCC CAGAGCCACT
  W
  CCGTAAGACC CCTTTCTAGG GCCTGTGGGA AAGAGTGGGA AAAAGGGAAT TTCTATGGCT
  GAGTGGAGAA GAAAGCACAG TGTAGCTCCT GGGCGCCTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss46013820	mCV22939219	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss322110005	CHEV_7_16898829	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs31256977					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16047405 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18372	CpG island 18372	328 bp distal
Cpgi18373	CpG island 18373	67 bp proximal
Rr167075	regulatory region 167075	within coordinates
Rr380460	regulatory region 380460	1619 bp upstream
Tssr64601	transcription start site region 64601	135 bp upstream
Tssr70734	transcription start site region 70734	1055 bp upstream
Tssr70735	transcription start site region 70735	1010 bp upstream
Tssr70736	transcription start site region 70736	489 bp downstream
Tssr70737	transcription start site region 70737	554 bp downstream
Tssr70738	transcription start site region 70738	573 bp downstream