rs31257801 SNP Detail

Summary

• ID
  rs31257801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79894618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG GCTTAGATTT TTCAAAACCT
  R
  CTTTGTATTC TTGAATGCTT CAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46013834	mCV23905084	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145139833	ENSMUSSNP4148861	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322280546	CHEV_7_87389756	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31257801					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79894618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	1244 bp proximal
Gm73873	predicted gene, 73873	within coordinates
Rr158192	regulatory region 158192	1618 bp distal
Rr165873	regulatory region 165873	within coordinates
Rr168083	regulatory region 168083	982 bp proximal
Rr400401	regulatory region 400401	1325 bp upstream
Tssr2310	transcription start site region 2310	1489 bp upstream
Tssr67422	transcription start site region 67422	1499 bp upstream
Tssr67423	transcription start site region 67423	1505 bp upstream
Tssr67424	transcription start site region 67424	1560 bp upstream
Tssr67425	transcription start site region 67425	1577 bp upstream
Tssr67426	transcription start site region 67426	1636 bp upstream
Tssr67427	transcription start site region 67427	1659 bp upstream
Ttll13	tubulin tyrosine ligase-like family, member 13	1506 bp upstream