rs31257959 SNP Detail

Summary

• ID
  rs31257959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:153929228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTTCCA GATCAGTCCT
  TCCAGTTCAT TGACTCTTAT TATGTGGCTC AAGGCATCCT GATATATACA TACAGTGCAT
  TAGAGCTTGC ATGTGGACTT ATGAGAGAAA AGGCTTGAGT GGGAAGTAAT GGAATCTCAC
  ACAAAGTGTA AGAGGGTGGT GAAAGGAGAT TTGTCTCCCA AAATGAGCAA AAACTGTCTG
  Y
  CATCTCTCCA AAGTTTATAA AAGAAAATTG AAAATATTTT GAGATATAAT AGGATGTGTT
  TCAAGTCGTC TTGGCTCACA CCTCAGACTC ATTGTGTTAT CAGCATTTAC CTCCATTCAA
  AGCTTCCTTT GTAGATCTCA CAGAATTGCC TGCCCTCTCA CAGAAAGAAA TCATCATTCT
  GACCACTTAA ACATGTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46504231	mCV23894515	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss134512380	ENSMUSSNP7174547	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31257959					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:153929228 () rs orientation: forward

Symbol	Name	Function Class
Rr3369	regulatory region 3369	1028 bp distal
Rr10542	regulatory region 10542	1135 bp distal