rs31258096 SNP Detail

Summary

• ID
  rs31258096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70441069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGGA GGAAGGAAGG
  GAAAGCCCTG CTCGGCTGGA CTGCCTGGGA CCTCTTGACT CAACCCACTG GTGGGGGAGG
  AAGGTAGGTT TGTGGGAGGG AATTATGGCC AGCTGGGTGG GAGCTCAAGG ACCCAGGAAA
  CAGGCAGCTC TGGGCACCCG CCTGCAGGCT GCCAGTGCCG ACTCCCAGAG GCACAATGGA
  Y
  TGCTTGTTAG GCCTGGGGCA CGAGCTCTGG GTGGGAGTGG GGGAGGGGAA GCCAGGCAAG
  GAGGAAGATA GAGAGGCTGG CCAGGAGCAG GCCTGCAGCC TGCTGACCAC CCTTCTGGGG
  CTCTCCGTGC CAGGATAGCC AGCTCCCCTC GAGGGAAGGC ACAGGGGAAC TAGGGCAGCT
  AACACAGAGG ACCTGAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39270622	mCV24337828	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss51532219	NES14630565	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	C	C	T	T	C	T
ss139681786	ENSMUSSNP6563545	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31258096					SNP	C	C	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532219	NES14630565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70441069 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			1704 bp upstream
Rr494880	regulatory region 494880			489 bp proximal
Rr494881	regulatory region 494881			993 bp proximal
Rr494882	regulatory region 494882			1617 bp proximal
Rr494883	regulatory region 494883			1715 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			213 bp downstream
Tssr126404	transcription start site region 126404			1551 bp upstream
Tssr126405	transcription start site region 126405			1605 bp upstream
Tssr126406	transcription start site region 126406			1624 bp upstream
Tssr129550	transcription start site region 129550			167 bp upstream
Tssr129551	transcription start site region 129551			154 bp upstream
Tssr129552	transcription start site region 129552			140 bp upstream