rs31258754 SNP Detail

Summary

• ID
  rs31258754
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156820059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCGCCCC CAAACACATT TACACACACA CACAAACAAA
  CAAAAAAAAA TGGAAAGAAA GAAGGGACAT AGGGGAGAGA GAAAGGAAGG AAGACGGGTG
  K
  CAGACAGGCT GAACAGGTAA ACAGTATTTT CTTAGGGTAT GCATGTCTCA TGCAGTGCCT
  GACACAACTT TTACTACAGA ATCATTTGCC ATTCCTTCAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49719810	NES13064738	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31258754					SNP	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719810	NES13064738	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156820059 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	1282 bp upstream
Rr372293	regulatory region 372293	1227 bp upstream
Rr396431	regulatory region 396431	1906 bp downstream
Rr421298	regulatory region 421298	964 bp distal
Rr421299	regulatory region 421299	808 bp distal
Rr421300	regulatory region 421300	55 bp proximal
Rr421301	regulatory region 421301	1453 bp proximal