rs31258762 SNP Detail

Summary

• ID
  rs31258762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156818182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTATGAAGT TTTAAGAGCC AAAGGCTCAC CGGGTTTCAG GTTTGTTCTT
  TGTAGCTTGG AGGTATCTCA TTCTTGCTCC ACTAAGTTCT TTGACATTTC TAAGCATCTA
  GGTTGAGTAC ATGCATTCAT ATCATAGATG ATTCTTAGTA AAACATTTTA AACACAGATA
  R
  CAGCTTATTG ATCACATAGT TATCATTTCC AGAGACATAA GGCATATGCC TGCACACTGA
  AGCAGCCTGC GTCTGTCTAA CATGTTAACA ATAACGACTC AGCAAGTTAA AGCCTCACAC
  CAGGGACACT GACACAGCTT GTTCTTAACA AGCATGTGAC TTCTTGTCCT CTGTTTATGA
  TTTCCCTCTG AAAGCCACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49719819	NES13064818	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31258762					SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719819	NES13064818	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156818182 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm39685	predicted gene, 39685	919 bp upstream
Rr396431	regulatory region 396431	29 bp downstream
Rr421298	regulatory region 421298	within coordinates
Rr421299	regulatory region 421299	1048 bp proximal
Rr421300	regulatory region 421300	1932 bp proximal