rs31259490 SNP Detail

Summary

• ID
  rs31259490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79693115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCAGCA GCCCTACAAA
  GGAAACTCTC TGGGGATTGA TTTTTAAAAA TGTTTTTGTG CTACTTTGAT CGAACTCGGA
  CCTTCAAACA TACCAGCAAG TGCTTTGCCA CTGAGCTATA ACCCATCTCT TTTAGGTTTT
  AGAGTTTTAA CAGCACTTGA GAAGCTATAT ATTCAGGAAG TTATATATGC CTTGAATTTG
  M
  TCTTCCAGTC TCAGCCTCTC AGTTACTTGG GGTTATAAGT GTATGCCACC ATGCCGGGCT
  CCTGGTCGGG GAGGGGGCGA TTCTTATGAG AAGTAATAGA CTTTGCTTTT GTTTAAAACA
  AATTACAGAA CATGCAGCTA CAATGCATCC CGATTACTAA ACGTCTACTG TAGGTTACAG
  GAAAACTGGA GGTTAGCTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47033496	NES10773469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31259490					SNP	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47033496	NES10773469	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79693115 () rs orientation: forward

Symbol	Name	Function Class
Rr578575	regulatory region 578575	1085 bp distal
Rr578576	regulatory region 578576	1515 bp proximal