rs31259740 SNP Detail

Summary

• ID
  rs31259740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162399000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAC AGGTTAGAAG TGCGTTACAT
  R
  TAAAGCCACG GAATAGAGAA CGTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss45013508	mCV22812887	ABI	CRAMUS_MOUSE	f	SNP	G	G			A
ss51397884	NES14465436	PERLEGEN	MM_PANEL2	f	SNP			A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs31259740					SNP	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51397884	NES14465436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162399000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	within coordinates
Rr396472	regulatory region 396472	726 bp downstream
Rr396473	regulatory region 396473	within coordinates
Rr421988	regulatory region 421988	195 bp distal
Rr421989	regulatory region 421989	884 bp distal
Rr421990	regulatory region 421990	816 bp distal
Rr421991	regulatory region 421991	within coordinates
Tssr9715	transcription start site region 9715	775 bp downstream
Tssr9716	transcription start site region 9716	759 bp downstream
Tssr9717	transcription start site region 9717	676 bp downstream
Tssr9718	transcription start site region 9718	197 bp upstream
Tssr14622	transcription start site region 14622	1109 bp upstream
Tssr14623	transcription start site region 14623	66 bp upstream
Tssr14624	transcription start site region 14624	56 bp upstream
Tssr14625	transcription start site region 14625	23 bp upstream
Tssr14626	transcription start site region 14626	2 bp downstream
Tssr14627	transcription start site region 14627	42 bp downstream
Tssr14628	transcription start site region 14628	63 bp downstream
Tssr14629	transcription start site region 14629	108 bp downstream
Vamp4	vesicle-associated membrane protein 4	within coordinates