rs31259755 SNP Detail

Summary

• ID
  rs31259755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:111467194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTGGGCCC AAGGTCATGG GTGCTCCAGT GCAGGGCAGC
  CCAGTAGGTC TGGTAAAGCA GGGATTCCTG TATGTGGATG GAGTTACCAC AGGGCTCCCC
  R
  AGGCTGCTTA GCGAGTTATC TCCAGGGTCT GAGACCTGGC CCACCAAACT CAGTTGTCAC
  CAGAGCCCCG AGTATAGAGT CCAGGAAAAC AAATGGCCAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47533666	NES11188642	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31259755					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47533666	NES11188642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:111467194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21040	CpG island 21040	1259 bp distal
Il34	interleukin 34	1267 bp downstream
Mtss2	MTSS I-BAR domain containing 2	within coordinates
Rr179385	regulatory region 179385	794 bp distal
Rr179386	regulatory region 179386	1407 bp proximal
Tssr2686	transcription start site region 2686	1985 bp downstream
Tssr79433	transcription start site region 79433	363 bp upstream
Tssr79434	transcription start site region 79434	495 bp upstream
Tssr79435	transcription start site region 79435	624 bp upstream