rs31259778 SNP Detail

Summary

• ID
  rs31259778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156738844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAGTTTC CCAGATACCA CTATGCTGTT
  ACTTCTTGAC TCATCAAGTC ATGCTTCAGT TGCTCTGACT AGGGAAGCCT CTAGGCTTCA
  ATCTAACAAC AAGGTTTCAG TTTCTGTTGC CTCTCCATCT TCACTCCAGC TGCAGTTACA
  S
  AGTTTATTCT AGTTTGAAGT TTATAGAGAA AACTTTCAGT TTGTACTGTT GGCTTTTATT
  CTTCAACACC AGTAACTGTC AGCCTCACTC TGCTGCATGT ATTTAATAAT AAATGTATAC
  TATTCAGTAG CCAACTGAAA TGTTGAGTAT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45065093	mCV23082982	ABI	CRAMUS_MOUSE	f	SNP	G	G	C						C
ss49720115	NES13067258	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C	C	C	C	G		C	G	G	C		G
ss145809057	ENSMUSSNP696922	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
ss320073034	CHEV_1_158841405	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31259778					SNP	G	G	C	C	C	G	C	C	C	C	G	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720115	NES13067258	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156738844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr396428	regulatory region 396428			within coordinates
Rr421275	regulatory region 421275			1187 bp distal
Rr421276	regulatory region 421276			within coordinates