rs31260435 SNP Detail

Summary

• ID
  rs31260435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79693510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATGTTC TCTCTTAGGT
  TCCAAACGCA AAGGGCTTCT ACCTCTAAGA CCATGGGGTG CAAATGTAAT GTGAAGCAAG
  ATGGCCATCC TGCTAGCAGT TTCCAGCCTG ATAGTTTCTC CATCCTGGGT TCTGGAGTGG
  AACGGAAAGA CTGAGCCAAA TCAAGAGGTA AAGTTTGACG GGCTCACGTG TTTGAGCACT
  Y
  GGTCCCCAGC TGGTGACACT GTTTTGGAAG ACTGTGAAGG CTGAGGAGGT GTGGCCTGGC
  TGGCCATTGA AGGCCCAACC CGGGTCTAGT TTTGCTCTCT CTGCTTCCTG CCTGCTATGA
  CTCTTCTACA GACGGCAGGG GTGCGGGCTG GAAGGGTGGG GGGCATATCG GCCACCGAGC
  TTCCCTGAAG CAGAAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47033502	NES10773472	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31260435					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47033502	NES10773472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79693510 () rs orientation: forward

Symbol	Name	Function Class
Rr578575	regulatory region 578575	1480 bp distal
Rr578576	regulatory region 578576	1120 bp proximal