rs31260863 SNP Detail

Summary

• ID
  rs31260863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156839973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAATTTTT CAGCTAAAAA TTAACTTTAT GAAGATTAAA
  ATACTGTAGC CCAGTCTACA TAACAGAAAT AGCATGTACA GGGTAAGTGA AAGCCACACG
  Y
  GGAGTTTGCA TTTTTTAGAT AATAATACTT AAAAAAGAAA GAGTAAACAC TACCAAACCA
  AATTGGAATA TTTATAAACA TGGACCCATA AACTTAATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45022431	mCV24594838	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss49719749	NES13064156	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	T	T		T	C	T	C	C	T	T	C
ss145811803	ENSMUSSNP794126	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31260863					SNP	T	T	T	T	C	T	T	T	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719749	NES13064156	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156839973 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	within coordinates
Rr421310	regulatory region 421310	488 bp proximal