rs31260951 SNP Detail

Summary

• ID
  rs31260951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:111438211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGGTA ATGACAGGGT
  CTAAGGAGCT GTCAGCATTT CCTTTGTGAC AGCTCGTTCC CAGCTGGGCT GCCAAACACA
  GCCCAGTGCT GAGCTGGCAG CCCAGCGGCC CCAAGAGCCC CATGTCACAG CCCCTCAAGG
  TCCTTCCTCC TCAGGTCCTG TGTAGACGCA GTGACAGGGA GCCAAGCCTT CTAACTACTT
  Y
  GCCTCTCCCT CAGGAAAGCC AGAACCTCTT CTGCTGCCTG TACCGCTCCT GGTGCCACAA
  CCCAGTCACC ACCGTGTCCC TCTGCTTCCT CACCCAGAAC TACCGCCACG CCTATGACCT
  CATCCAGAAG TTGTATCCTC TCATTGTCAT CCATCCCCCA GGGAGGGCCA AGAGTGGCCT
  TGCTGCCATT TCCTGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47533591	NES11189585	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31260951					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47533591	NES11189585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:111438211 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr669877	regulatory region 669877			1571 bp proximal
Vac14	Vac14 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant