rs31261804 SNP Detail

Summary

• ID
  rs31261804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:111439871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCATCAG AACTTAGTTT
  TGTCTGTTTC CTCAAAATGG GTCACATACA CACAGGCCAG TGCTGACATG AAACCCATCA
  GAATGTTAAA CCAGAGCCTG CCATGGGCTG TCCCTCGATG CCCTCCCCAG CCTGCTGCCT
  CTGCCCTGAC CCTCTGGGGC TTGCCCAGGA GCCGCCATGT GCCAGGAGCC ACTGGGCGAG
  Y
  ACTGCCTGGT GAGTAACACC CAGGCTAAAT GTGCAGAAGC AGCGGCTGCC TGGGCAAGCA
  CAGCACTTGG CGCCTCCACA CATGCAGCGC CTGCTCCTCA AAGCAGGCAG CACTCCAGAT
  AACACACGTG TGTTTACAGT GTAGTGGAGA AGCCAGAGGC AGCCCTGGCT CTAGCCACCT
  TCCTAGCCTA GATGGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47533594	NES11189586	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31261804					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47533594	NES11189586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:111439871 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr669877	regulatory region 669877			within coordinates
Rr669878	regulatory region 669878			1530 bp proximal
Tssr79422	transcription start site region 79422			1879 bp upstream
Vac14	Vac14 homolog (S. cerevisiae)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant