rs31262481 SNP Detail

Summary

• ID
  rs31262481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:111441924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAAGGA AGCAGCTGAG
  CCTGGGGAAG GTAGGCTTAA CCCAGCAGCA GGTTCAGGGA CGTCAGGCTG AGGGGCTGCT
  AGGTACGTCA GTCAAATGGA TGGGTAGGAG GAAATTGGGG CATAAAAATG GCTAAAATTC
  TCTGAGAGAA GGGCCCCAGG CCTGGCTGCC TGTGGAGGAG CAACTGCTTA GCTCGTAGGC
  R
  GCTGTGTCTC CGCCTAGCAG TGCTTGGTCC AGGTGCTTCC AGTGCTTTCG CAGCTCGGCT
  GAGGAAGGGA TCTGGGCTAG TGTGTTCTAG AGCAGGCCCA GGATTCCTGA CCCCTGACTT
  CTGCCCTGCT GCAGATCTAC GCCTGCAACT GCTGGACGTG AAGAACAACC CATACCTGAT
  CAAGGCCCTG TACGGCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47533612	NES11189406	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31262481					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47533612	NES11189406	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:111441924 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr669877	regulatory region 669877			1816 bp distal
Rr669878	regulatory region 669878			within coordinates
Rr669879	regulatory region 669879			455 bp proximal
Rr669880	regulatory region 669880			1738 bp proximal
Tssr79422	transcription start site region 79422			163 bp downstream
Vac14	Vac14 homolog (S. cerevisiae)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant