rs31263034 SNP Detail

Summary

• ID
  rs31263034
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:111441962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAGCAG CAGGTTCAGG
  GACGTCAGGC TGAGGGGCTG CTAGGTACGT CAGTCAAATG GATGGGTAGG AGGAAATTGG
  GGCATAAAAA TGGCTAAAAT TCTCTGAGAG AAGGGCCCCA GGCCTGGCTG CCTGTGGAGG
  AGCAACTGCT TAGCTCGTAG GCAGCTGTGT CTCCGCCTAG CAGTGCTTGG TCCAGGTGCT
  K
  CCAGTGCTTT CGCAGCTCGG CTGAGGAAGG GATCTGGGCT AGTGTGTTCT AGAGCAGGCC
  CAGGATTCCT GACCCCTGAC TTCTGCCCTG CTGCAGATCT ACGCCTGCAA CTGCTGGACG
  TGAAGAACAA CCCATACCTG ATCAAGGCCC TGTACGGCCT GCTCATGCTG TTGCCCCAGA
  GCAGTGCCTT CCAGCTGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47533615	NES11189408	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31263034					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47533615	NES11189408	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:111441962 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr669877	regulatory region 669877			1854 bp distal
Rr669878	regulatory region 669878			within coordinates
Rr669879	regulatory region 669879			417 bp proximal
Rr669880	regulatory region 669880			1700 bp proximal
Tssr79422	transcription start site region 79422			201 bp downstream
Vac14	Vac14 homolog (S. cerevisiae)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant