rs31263508 SNP Detail

Summary

• ID
  rs31263508
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79785057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA CGATGTATGA AAAACCATAT
  K
  CATAAACTTT ATAAACCGAT AGGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J
ss45533553	mCV23428674	ABI	CRAMUS_MOUSE	f	SNP	G	G			G		T
ss47034930	NES10769002	PERLEGEN	MM_PANEL2	f	SNP	G		T	T		G		T		G		T	G
ss135376871	ENSMUSSNP3562536	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					T				G
ss320812407	CHEV_3_79681672	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J
rs31263508					SNP	G	G	T	T	G	G	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034930	NES10769002	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79785057 () rs orientation: forward

Symbol	Name	Function Class
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	590 bp proximal
Rr578600	regulatory region 578600	1073 bp proximal
Rr578601	regulatory region 578601	1459 bp proximal
Tssr29594	transcription start site region 29594	467 bp downstream
Tssr29595	transcription start site region 29595	444 bp downstream