rs31263608 SNP Detail

Summary

• ID
  rs31263608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156572851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA CACAGCCCTG TTATCTAATC
  Y
  GCTCTCACCT TCTGCTTCTT TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45024179	mCV24597241	ABI	CRAMUS_MOUSE	f	SNP		T		T		C
ss49721014	NES13072023	PERLEGEN	MM_PANEL2	f	SNP	T		T		C		C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31263608					SNP	T	T	T	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721014	NES13072023	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156572851 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	within coordinates
Gm69913	predicted gene, 69913	43 bp upstream
Rr421238	regulatory region 421238	1015 bp distal
Rr421239	regulatory region 421239	792 bp distal
Rr421240	regulatory region 421240	58 bp distal
Rr421241	regulatory region 421241	within coordinates