rs31263610 SNP Detail

Summary

• ID
  rs31263610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156571401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGAGCCA TCTCACCTGC
  CCCCAGAAAT TAGCATTTTT TAAGCTGGTA CACATCTGCA ATGTTTTTCC ATTTATTTTG
  GATGAAAAGG CCTTGGTAAT CACTTCCAAT ACCAACAATG TCATTTTCTA TTTAAAAGAT
  AAAAGAATAA CTAGCTAGCA TAGCCTTTTT ACAAAATGAT TGATCTAAAT TTATGCAACA
  Y
  TGCTTTTAAA CCTGTAGCTT TCGAGTTTGC TTACAAATTC AAGAGAGATT TGGCACATTA
  TGTCCTGTCA GCCCTAATGG ATAAAAAGTA CACTGCAGTG CTCACCGTGT GCTCTGCAGT
  GCTCACCGTG TGCTCTGCAG TGCTCACCTG TATACAGTGC TCACCTGTGT ACAGTGCTCA
  CCCATGTACA ATGCAGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49721016	NES13072041	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31263610					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721016	NES13072041	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156571401 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	573 bp upstream
Gm69913	predicted gene, 69913	within coordinates
Rr421237	regulatory region 421237	1186 bp distal
Rr421238	regulatory region 421238	79 bp proximal
Rr421239	regulatory region 421239	436 bp proximal
Rr421240	regulatory region 421240	763 bp proximal
Rr421241	regulatory region 421241	1393 bp proximal