rs31263611 SNP Detail

Summary

• ID
  rs31263611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156570508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC AATCAAATAA GTGTGTCACT
  R
  GCCCATGTGC CTTCTGGCTT CTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45165832	mCV24597257	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss49721017	NES13072082	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	A	G	G	G	G	G	G
ss145803890	ENSMUSSNP4538222	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31263611					SNP	G	G	A	A	A	G	A	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721017	NES13072082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156570508 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	1466 bp upstream
Gm69913	predicted gene, 69913	519 bp downstream
Rr421237	regulatory region 421237	293 bp distal
Rr421238	regulatory region 421238	972 bp proximal
Rr421239	regulatory region 421239	1329 bp proximal
Rr421240	regulatory region 421240	1656 bp proximal