rs31263612 SNP Detail

Summary

• ID
  rs31263612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156570414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTCTCT CTGTGTGTGC
  ACACGTGTGG GAAGACAGTT GTTTCCCTCC TTCCACCTTT CCATGGTTTC CCAGGATAGT
  GGGTGGGAAG TGTTTTTATC CACTGAGCCG TGACTACAGG GGACTCAGCC TTGGGTGTTG
  CTGGTGTCCC GGCTTAAGGC AGACCTTAGC TCTGGGCTTT CCCTATACCA GAAGGCAAGC
  R
  GTGCTAATCC AATGGCTAGC CAGGTGCCTA GCCACACACA TCTTTTTGGA AGGGAAACAC
  CTAGAGGCCT ATCAATCAAA TAAGTGTGTC ACTGGCCCAT GTGCCTTCTG GCTTCTGAGC
  CTCTAGATGA AGATGGCTTC CAGGGTCTGG AGATAAGGAC TAGGCAGAGA ATTTGAGAGG
  GAGTGGGCTA GGGGCCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49721018	NES13072080	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31263612					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721018	NES13072080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156570414 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	1560 bp upstream
Gm69913	predicted gene, 69913	613 bp downstream
Rr421237	regulatory region 421237	199 bp distal
Rr421238	regulatory region 421238	1066 bp proximal
Rr421239	regulatory region 421239	1423 bp proximal
Rr421240	regulatory region 421240	1750 bp proximal