rs31264294 SNP Detail

Summary

• ID
  rs31264294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:138799359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTGGCCCCA GATCACTACC TAAGGAAGGA AGCTGTAGGG CAGAGGGGAG AAGCAGAAAG
  AGTTGGCAGG CAGCCAAGGA AGCGGTCCAT GCAGGAGACT TGGCCAAGCT GACCTCAGCA
  GGACCTCAGG GGAATCTCAG AGCTATTAGG ATTGGCATCG TGAGGCCAGA AAACAAGAGT
  CATCCAGAAG TGACCCCAGT TCCTGTTTAA GGGCATCTCA GTGTTGGTAT CATGAGCCCA
  CTGTGCAACA GCATAAGGTT TGCAGAGGTG ATATTGTTTG GGACAAATGT AAATAAAAAT
  R
  AAAAAACGGA GCACATGGCA CAGATGATGG TGAAAGCAGA TGCCTTTGCC TTCAGTCTCT
  AGCTCGGCAG GAGGCAGCTT GCTTTGGATG TGTCTGAGCT AGGGGGTGCT CAGGAACCCT
  CCTCTGGAGC TATAGGGACC ATGGGAGCTG CAGGACAAGC TATGGATGGA CTGAGGGGAG
  GGCACATGCC TGGCCAGTTA GCTGTTGGTG AGACTGCAGA GATGGATCTC TGGGCTGTTG
  CCACCCAGTC ATGCCTGCCT GCCCTGGCCA CCTGGTCTTC TGGGCCCATG TCCTACATAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46014159	mCV23696900	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss145976071	ENSMUSSNP5606387	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31264294					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:138799359 () rs orientation: forward

Symbol	Name	Function Class
Lrrc27	leucine rich repeat containing 27	within coordinates
Rr657518	regulatory region 657518	113 bp distal
Rr657519	regulatory region 657519	786 bp proximal
Tssr69706	transcription start site region 69706	1131 bp upstream