rs31264460 SNP Detail

Summary

• ID
  rs31264460
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79785384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACTGCCA AGGTGACTGT GAGTTTGAAT CTTCTCACAG
  CTTTTGGTGT TATTGGTCCT TCCTCCTCCA GCACCTTCTT CTTCCCTTCT CGTCCTGCTT
  S
  CTTGCTTGTG GAGTCTCATC AAGGACAGCG GTTCTCAATG TTTGGATTCC CTGTGTCAAT
  TCAGACACTG GCACTTCCAT CCAGAGTATC CAATTTGGTA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034943	NES10769009	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31264460					SNP	C	G	C	C	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034943	NES10769009	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79785384 () rs orientation: forward

Symbol	Name	Function Class
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	263 bp proximal
Rr578600	regulatory region 578600	746 bp proximal
Rr578601	regulatory region 578601	1132 bp proximal
Tssr29594	transcription start site region 29594	794 bp downstream
Tssr29595	transcription start site region 29595	771 bp downstream