rs31264463 SNP Detail

Summary

• ID
  rs31264463
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79786104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATGTCA ATCATTAGCC
  AACAAAATGC TCCAGCAGGC CAATCTGCTG GAAGCAGTTT CTTCCCCGAG GTTCTCTCTT
  TCCAATTTTC TCTAGTTTGT CTCTAGTTAG CAACAACAAC AACAACAACA ACAACAACAA
  CAAACCCTAA CCAGGTCAAA CACCCTAGAA ATTTATGCAT TCTCCAGAAA CCCTGGTTTT
  K
  GACCACCATT CAGCAGTTTT GTAAATGCTA AATGGTTTAG TAGCCTATAA AGGGGTTCTA
  ACCAGACAAA GTGTGGCAAA CACAGGCCTG ACCATGGCAA ACATTGTAAG GCAATCAGGT
  TTTGCCCTTT TACCTCTTCT CTCCCTTGCT AAAACCCATC ACATTCCTAA AGCTAGCCTC
  TGAGGTCTAT CCCCTTATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034947	NES10768948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31264463					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034947	NES10768948	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79786104 () rs orientation: forward

Symbol	Name	Function Class
D3Mit310	DNA Segment, Chr 3, Massachusetts Institute of Technology 310	1796 bp proximal
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	110 bp distal
Rr578600	regulatory region 578600	26 bp proximal
Rr578601	regulatory region 578601	412 bp proximal
Tssr29594	transcription start site region 29594	1514 bp downstream
Tssr29595	transcription start site region 29595	1491 bp downstream