rs31264480 SNP Detail

Summary

• ID
  rs31264480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT GAAGCTTCAT GACTACACAC
  R
  TTCAGTAGAG GTTATTATTA TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss49720036	NES13066375	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	G		G	A
ss145809582	ENSMUSSNP513937	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs31264480					SNP	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720036	NES13066375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765924 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	440 bp upstream
Cpgi904	CpG island 904	356 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	458 bp upstream
Tssr9581	transcription start site region 9581	1303 bp upstream
Tssr14474	transcription start site region 14474	512 bp upstream
Tssr14475	transcription start site region 14475	428 bp downstream
Tssr14476	transcription start site region 14476	457 bp downstream
Tssr14477	transcription start site region 14477	1179 bp downstream
Tssr14478	transcription start site region 14478	1199 bp downstream
Tssr14479	transcription start site region 14479	1274 bp downstream
Tssr14480	transcription start site region 14480	1672 bp downstream