rs31264481 SNP Detail

Summary

• ID
  rs31264481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GCAATCTGGT GAATAAAAGA
  Y
  AGAGAACAGT ATTTGCAGAA AAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss49720037	NES13066373	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	T	C	C	C		C	T
ss145809551	ENSMUSSNP1658930	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs31264481					SNP	T	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720037	NES13066373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			657 bp upstream
Cpgi904	CpG island 904			573 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			675 bp upstream
Rr421284	regulatory region 421284			350 bp distal
Rr421285	regulatory region 421285			244 bp proximal
Rr421286	regulatory region 421286			671 bp proximal
Rr421287	regulatory region 421287			833 bp proximal
Rr421288	regulatory region 421288			1165 bp proximal
Rr421289	regulatory region 421289			1240 bp proximal
Rr421290	regulatory region 421290			1626 bp proximal
Rr421291	regulatory region 421291			1682 bp proximal
Tssr9581	transcription start site region 9581			1520 bp upstream
Tssr14474	transcription start site region 14474			295 bp upstream
Tssr14475	transcription start site region 14475			645 bp downstream
Tssr14476	transcription start site region 14476			674 bp downstream
Tssr14477	transcription start site region 14477			1396 bp downstream
Tssr14478	transcription start site region 14478			1416 bp downstream
Tssr14479	transcription start site region 14479			1491 bp downstream
Tssr14480	transcription start site region 14480			1889 bp downstream