rs31264481 SNP Detail

Summary

• ID
  rs31264481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GCAATCTGGT GAATAAAAGA
  Y
  AGAGAACAGT ATTTGCAGAA AAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss49720037	NES13066373	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	T	C	C	C		C	T
ss145809551	ENSMUSSNP1658930	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs31264481					SNP	T	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720037	NES13066373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765707 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	657 bp upstream
Cpgi904	CpG island 904	573 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	675 bp upstream
Tssr9581	transcription start site region 9581	1520 bp upstream
Tssr14474	transcription start site region 14474	295 bp upstream
Tssr14475	transcription start site region 14475	645 bp downstream
Tssr14476	transcription start site region 14476	674 bp downstream
Tssr14477	transcription start site region 14477	1396 bp downstream
Tssr14478	transcription start site region 14478	1416 bp downstream
Tssr14479	transcription start site region 14479	1491 bp downstream
Tssr14480	transcription start site region 14480	1889 bp downstream