rs31264482 SNP Detail

Summary

• ID
  rs31264482
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTA ACAGAGCTGC CCACTGATGA
  S
  TTTATCTCCA TCACAGCACG TGTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49720038	NES13066420	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	C	G	G	G	G	C
ss145809520	ENSMUSSNP209566	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31264482					SNP	C	G	G	G	C	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720038	NES13066420	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765160 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			1204 bp upstream
Cpgi904	CpG island 904			1120 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			1222 bp upstream
Rr421284	regulatory region 421284			within coordinates
Rr421285	regulatory region 421285			791 bp proximal
Rr421286	regulatory region 421286			1218 bp proximal
Rr421287	regulatory region 421287			1380 bp proximal
Rr421288	regulatory region 421288			1712 bp proximal
Rr421289	regulatory region 421289			1787 bp proximal
Tssr14474	transcription start site region 14474			246 bp downstream
Tssr14475	transcription start site region 14475			1192 bp downstream
Tssr14476	transcription start site region 14476			1221 bp downstream
Tssr14477	transcription start site region 14477			1943 bp downstream
Tssr14478	transcription start site region 14478			1963 bp downstream